run

Import in python using from mcot.core._scripts.surface.watershed import run

mcot.core._scripts.surface.watershed.run(surface: mcot.core.surface.cortical_mesh.CorticalMesh, depth, min_depth=0, min_size=0, fill_ridge=False)

Runs watershed on the graph generated on the surface

Parameters:

• surface – mesh representing cortical surface
• depth – (N, ) array where N is number of vertices
• min_depth – minimum offset between minimum along ridge and minimum depth for each segment
• min_size – minimal size of each segment in mm^2
• fill_ridge – if True, fills the ridge with the value of the smaller of the neighbouring parcels

Returns:

(N, ) array with segmentation (-1 on edges, 1-M within segments, where M is the number of segments)