_scripts merge_hcpΒΆ
Usage
Run using mc_script _scripts merge_hcp after installation or using ~ndcn0236/bin/mc_script _scripts merge_hcp on jalapeno.
Import in python using from mcot.core._scripts import merge_hcp
Documentation
Creates new directory with links to HCP data
The full HCP directory structure is reproduced in the target directory with symlinks to the individual files. The resulting directory will contain the structural, diffusion, and functional data.
Functions
HCP_dir([modality, release]) |
Gets the parent HCP directory |
link(src[, modality, release]) |
Links to the diffusion data on the jalapeno server or the local copy |
merge_hcp(target_dir, subject[, release]) |
Create a new HCP-like directory in target_dir/subject with links to split HCP directories |
CLI interface
add_to_parser([parser]) |
Creates the parser of the command line arguments |
run_from_args(args) |
Runs the script based on a Namespace containing the command line arguments |