get_brain_model

Import in python using from mcot.core._scripts.cifti.ptx2dconn import get_brain_model

mcot.core._scripts.cifti.ptx2dconn.get_brain_model(filename: str, assumed_hemis=None) → nibabel.cifti2.cifti2_axes.BrainModelAxis[source]

Creates a CIFTI BrainModel axis based on the provided file

Parameters:
  • filename

    can be one of the following:

    • dense CIFTI file, whose BrainModel axis should be adopted
    • single volume (NIFTI) or surface (GIFTI/ASCII) used as a mask
    • list of volumes and surfaces
  • assumed_hemis – editable list of hemispheres each surface is assumed to be
Returns:

BrainModelAxis describing the dataset